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Brain–Computer Interfaces
arXiv (BCI) · July 15, 2026

Leveraging unlabelled data for generalizable neural population decoding

Ximeng Mao, Nanda H. Krishna, Avery Hee-Woon Ryoo +2 more

Neural decoders turn brain activity into intentions or predictions, and a recent advance was to tokenize the data at the level of individual spikes, which lets a model pretrain across many recording sessions. The catch: those spike models have needed labeled behavior to train on, and labels are scarce.

MOJO loosens that requirement by training on two objectives at once, a self-supervised masked-autoencoder task that just reconstructs hidden spikes alongside the usual supervised one. Across monkey motor-cortex reaching and multi-region mouse recordings, this beats supervised-only training, and the gap widens when labels are thin, exactly the few-shot situation a new session presents. The unsupervised half also yields representations that are better at classifying brain regions and predicting spike statistics without being trained for either. It even carries over to human electrocorticography during speech, matching purpose-built neuro-foundation models.

Encouraging breadth across species and tasks, though the paper is where the caveats and numbers sit.

From the arXiv (BCI) abstract

Robust and accurate neural decoders are integral to neurotechnologies such as brain-computer interfaces and closed-loop experiments. Recent work has shown that tokenizing neural data at the spike level facilitates multi-session pretraining and delivers state-of-the-art decoding performance. However, current spike-based models are restricted to supervised learning (SL), limiting training to datasets with paired behavioural labels. To address this limitation, we introduce MOJO…


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